| 2007 JASN IMPACT FACTOR 7.111 | HOME AUTHOR INFO EDITORIAL BOARD SUBSCRIBE FEEDBACK ALERTS HELP | |||
| CURRENT ISSUE | ARCHIVES | JASN Express | ONLINE SUBMISSION | |

*
Department of Renal Pharmacology, SmithKline Beecham Pharmaceuticals, King
of Prussia, Pennsylvania.
Department of Molecular Genetics, SmithKline Beecham Pharmaceuticals, King
of Prussia, Pennsylvania.
Correspondence to Dr. Nicholas J. Laping, Department of Renal Pharmacology, UW2521, SmithKline Beecham Pharmaceuticals, 709 Swedeland Road, P.O. Box 1539, King of Prussia, PA 19406. Phone: 610-270-5310; Fax: 610-270-5681; E-mail: nicholas_j_laping{at}sbphrd.com
| Abstract |
|---|
|
|
|---|
| Introduction |
|---|
|
|
|---|
Many guanosine triphosphate (GTP)binding proteins take part in the signaling cascade of several growth factors and hormones that can affect the development and response to injury of renal cells. GTP-binding proteins also affect intracellular signaling by modulating the activity of enzymes, as well as regulating transport of proteins and RNA across the nuclear membrane. We describe here a novel GTP-binding protein, chronic renal failure gene (CRFG), that has selective expression in the outer medulla of the kidney, which is lost with renal disease or injury. To determine whether diabetes or features common to other models of chronic renal disease regulate CRFG, we measured its mRNA levels in subtotally nephrectomized rats, as well as in anti-Thy1.1induced nephritic rats.
| Materials and Methods |
|---|
|
|
|---|
Cell Culture
Renal epithelial carcinoma A498 cells and rodent NIH3T3 cells were obtained
from American Type Culture Collection (Manassas, VA) and grown in Eagle
minimal essential medium with 10% fetal bovine serum with penicillin and
streptomycin (50 U and 50 µg/ml, respectively). A498 cells were grown to
confluence and serum-starved for 48 h before the addition of 10%
serum-containing media for 48 h, after which RNA was extracted.
Differential Display
CRFG cDNA was isolated by the modified differential display method
(6) from total kidney RNA of
lean Zucker rats. Total RNA was extracted by guanidinium thiocyanate
denaturation and acidified phenol-chloroform extraction
(7). Kidney RNA from lean and
obese Zucker rats was treated with RQ1 DNase, and cDNA was synthesized by use
of Moloney murine leukemia virus reverse transcriptase and the primer
ACC-ACA-CAT-CTG-A. PCR was done with the primers ACC-ACA-CAT-CTG-A and
TGT-TGG-GAA-CAA-G. The reamplified 226-bp cDNA was cloned into the PCRII
vector by use of the TA cloning kit (Invitrogen, Carlsbad, CA).
Full-Length cDNA Cloning
On the basis of the 226-bp rat cDNA fragment generated by differential
display, a human expressed-sequence tag clone (HHEMG39) was identified in the
cDNA database of Human Genome Science (Rockville, MD), which contained a
1.3-kb partial human cDNA sharing 91% homology with the rat sequence in the
coding region. The full-length human CRFG (hCRFG) was cloned by use of the
marathon cDNA of human kidney (Clontech, Palo Alto, CA). PCR was performed
according to the manufacturer's protocol, with use of gene-specific primers
corresponding to the expressed-sequence tag clone (5' RACE primer:
5'-CTGTCATACTCTCCAGCAGCTGT-TCTCAGC-3' and 5'-CTTCCAATTTCTTCATGATGGCTGG-3').
The PCR products were cloned into pCRII vector (Invitrogen) and sequenced.
Subsequently after a putative open-reading frame was revealed, a pair of
primers flanking the open-reading frame (5'-AGCATGGCACATTACAACTTCAAGAAA-3' and
5'- TCTAGCGAAGCCACGCCAACCAAAC 3') were used to isolate the entire coding
region of hCRFG. The reverse transcriptionPCR was performed at 94°C
for 1 min, 60°C for 1 min, and 72°C for 2 min for 25 cycles. The
1.9-kb fragment was cloned into pCRII and sequenced. The rat and mouse CRFG
were cloned by degenerate reverse transcriptionPCR with use of human
primers.
Northern Blot
CRFG cDNA was labeled by random priming (Stratagene, La Jolla, CA) with
[
-32P]dATP (NEN, Boston, MA) and used as a probe, which
resulted in the detection of two transcripts of 1.5 and 2.5 kb. Equivalent
loading and transfer of RNA samples was verified by vacuolar the
H+-ATPase (8) (2.9
kb) or the ribosomal protein L32 (rpL32, 0.6 kb)
(9) mRNA levels. Membranes were
exposed to a phosphor-imaging plate, and bands were quantified with ImageQuant
software (Molecular Dynamics, Sunnyvale, CA). Statistical significance was
determined by ANOVA (SuperANOVA software; Abacus Concepts, Berkeley, CA).
In Situ Hybridization
Hybridizations were performed as described elsewhere
(8). Briefly, thaw-mounted
cryostat kidney sections (12 µm) from 4-mo-old Zucker rats or 3- and
24-mo-old F344 rats were fixed in 4% paraformaldehyde for 2 min. The tissue
sections were incubated in a humidified chamber at 50°C with
35S-UTP cRNA probe in the hybridization solution and washed. Slides
were exposed to a phosphor-image plate and scanned with Phosphor Imager
(Molecular Dynamics).
CRFG Transfection/Localization
Full-length CRFG was cloned into pEGFP mammalian expression vector under
control of the cytomegalovirus promoter (Clontech). A498 renal epithelial
cells and NIH 3T3 cells were transfected with the CRFG construct or the empty
vector with Lipofectamine Plus (Life Technologies, Gaithersburg, MD). The
transfected cells were seeded on glass slides for 24 h and then covered with
mounting medium (Vectamount; Vecta Laboratories, Inc., Burlingame, CA). Green
fluorescence protein was visualized by fluorescence microscopy with use of
FITC filters. A peptide sequence of CRFG, ARSGSCSRTPRDVSG, was synthesized and
conjugated with keyhole-limpet hemocyanin (American Peptide Co., Sunnyvale,
CA) and used to raise antibodies in rabbits (Covance, Inc., Richmond, CA). C23
antibody was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA).
A498 cells were seeded on glass slides and fixed with acetone for
immunocytochemical analysis. The CRFG antiserum was used at 1:10000 dilution,
and C23 antibody was used at 1:400 dilution.
| Results |
|---|
|
|
|---|
|
|
|
hCRFG encodes a polypeptide of 635 amino acids that is 45% homologous to yeast GTP-binding protein YPL093w. Mouse CRFG encodes the same number of amino acids, and the homology between hCRFG and mouse CRFG is 93%. Rat CRFG also shares 93% homology with hCRFG, but it has a two-amino-acid insertion at position 566. A GTP-binding motif, GYPNVGKS, is conserved among all species (Figure 3). During the preparation of this article, a human sequence was published in GenBank (accession number AF120334) that is identical to hCRFG, except that it is missing a Met at position 593. By radiation hybrid mapping, hCRFG was localized on chromosome 10 p15.2-.3. This region contains the genes for interleukin 2 (IL-2) and the receptors for IL-9 and IL-15.
mRNA Expression
In rats, CRFG mRNA has two transcripts: one at 1.5 and one at 2.5 kb.
Northern blot analysis confirmed that CRFG mRNA levels were decreased in the
kidneys of 4-mo-old obese Zucker rats, compared with lean littermates
(Figure 1B). This decrease was
evident in all animals, regardless of degree of renal disease, which is
variable at age 4 mo. In contrast, clusterin mRNA was increased only in those
animals with severe proteinuria (Figure
1B). From left to right, urine protein excretion in the lean rats
was 17.5, 11.4, 17.0, 27.5, 14.0, and 21.3 mg/d, respectively. In the obese
rats, urine protein excretion was 45.4, 41.0, 112.3, 68.8, 174.2, and 45.4
mg/d, respectively. Similarly, CRFG mRNA was decreased in the remnant kidney
of the 5/6 nephrectomized rat (Figure
1C), as well as in the kidney of the aged F344 rat
(Figure 1D). In the rat, the
highest expression of CRFG was found in the kidney, compared with brain,
liver, testes, spleen, heart, and lung
(Figure 4). As shown in
Figure 4, decreased mRNA levels
as a result of diabetic nephropathy in the obese Zucker rat were seen only in
the kidney. In situ hybridization localized CRFG mRNA to tubules of
the outer medulla, which is lost in the obese Zucker rat
(Figure 5, A and B) and the
24-mo-old F344 rat (Figure 5, C and
D). In addition, inducing nephritis by venous injection of
anti-Thy1.1 in Lewis rats decreased CRFG mRNA in the outer medulla 8 d after
anti-Thy1.1 treatment (Figure 5, E and
F). At the time of death, the control and
anti-Thy1.1treated animals had urine protein excretion levels of 8.1
± 0.5 and 82.2 ± 20 mg/d, respectively. In contrast, creatinine
clearance was not different between vehicle- and anti-Thy1.1injected
rats (542 ± 45 and 583 ± 20 ul/min per 100 g, respectively,
n = 3 to 4).
|
|
Northern blot analysis with use of the human cDNA probe showed that CRFG is a single band of 3 kb in length in human renal tissue (data not shown). In contrast to the rat tissue distribution, hCRFG was expressed at very high levels in testes, adrenal gland, brain, and placenta, as determined by multitissue dot blot (Figure 6). Lower mRNA levels were detected in heart, pituitary gland, kidney, and all other tissues available on the multitissue blot (Clontech). The relative expression of CRFG within subregions of the brain was fairly uniform, with highest expression in the occipital cortex, lowest expression in the cerebellum, and intermediate levels in all other regions (data not shown).
|
Subcellular Localization and Functional Analysis
To determine the subcellular localization of CRFG, we constructed a fusion
protein with green fluorescence protein at the amino-terminal end of CRFG.
When expressed in human renal epithelial carcinoma A498 cells or rodent
NIH-3T3 fibroblasts, the fluorescence signal was concentrated in the nucleus
(Figure 7). Within the nucleus,
enhanced signal is detected over nuclear structures reminiscent of nucleoli
(Figure 7, E and F). Antibody
raised against the C-terminal region of CRFG also shows nuclear localization
superimposable with fluorescence signal of the green fluorescent protein fused
to CRFG (Figure 8, A and B). In
contrast, the phosphoprotein C23/nucleolin did not colocalize with green
fluorescence CRFG (Figure 8, C and
D).
|
|
The nuclear localization of CRFG and the requirement of yeast ortholog
YPL093w for vegetative growth
(10) suggested that this gene
might play a role during cell growth. Therefore, the mRNA levels of CRFG were
examined in serum-starved (quiescent) A498 cells, followed by serum
stimulation. Fetal bovine serum added to quiescent cells increased CRFG mRNA
levels 1.8-fold (P
0.05, n = 8).
| Discussion |
|---|
|
|
|---|
The renal pathology and the associated change in expression of injury markers is surprisingly similar between aged F344 and obese Zucker rats (15, 16). Therefore, it was expected that the loss of CRFG expression in aged F344 rats would be similar to that seen in obese Zucker rats. However, CRFG expression was also decreased in the remnant kidney model, as well as in anti-Thy1.1induced nephritis. It was unexpected that the tubular CRFG mRNA was decreased in the anti-Thy1.1induced nephritis model, in which the origin of injury is in the glomerulus. However, this model also has elevated levels of proteinuria, which are 6-fold higher 1 d after the antibody injection and 10-fold higher after 8 d, whereas creatinine clearances were unchanged. Moreover, tubular upregulation of clusterin mRNA has been reported in murine lupuslike nephritis (17), indicating that tubular changes can occur as soon as glomerular basement membrane permeability is affected. In addition, aged F344 rats have significant proteinuria at age 24 mo (18,19), and rats develop proteinuria after 5/6 nephrectomy (4,20). Thus, a common component of all of these models is some degree of proteinuria but not a change in glomerular filtration (e.g., anti-Thy1.1 model). Because the renal mRNA levels of CRFG are dramatically reduced not only in diabetic rats but also in other models of renal disease, diabetes or elevated blood glucose levels specifically did not cause the change in CRFG expression. Rather, it seems that the tubules of the outer medulla were sensing the earliest changes in glomerular basement membrane permeability, such as proteinuria, and responded by decreasing CRFG expression well before GFR is grossly affected. The identity of the urinary protein that affects CRFG remains to be determined.
A common feature of many renal diseases is increased expression of cytokines and growth factors that include insulin-like growth factor-I (21,22), hepatocyte growth factor (23,24), transforming growth factor-ß (9, 25,26,27), and monocyte chemoattractant protein-1 (28,29,30). Because most renal diseases include loss of glomerular integrity, increased levels of insulin-like growth factor-I, transforming growth factor-ß, and hepatocyte growth factor have been detected in the ultrafiltrate (31). Ultrafiltrate from nephrotic kidneys can induce monocyte chemoattractant protein-1 expression in tubular epithelial cells and thus contribute to macrophage infiltration and interstitial fibrosis (30,31). If CRFG expression is regulated by cytokines and growth factors, then its promoter may detect changes in glomerular basement membrane integrity that precede gross tubular degeneration and glomerular sclerosis by sensing cytokines in the ultrafiltrate.
CRFG is a highly conserved gene with significant homology among yeast,
mouse, rat, and human. This is an essential gene in yeast, because knockouts
do not grow (10). In
particular, a GTP-binding sequence, GYPNVGKS, is conserved in yeast YPL093w as
well as in mouse, rat, and human CRFG. The GTP-binding consensus sequence,
GXXXXGKS, is conserved among numerous
subunit GTP-binding regulatory
proteins as well as Rab and renin-angiotensin systemrelated GTP-binding
proteins and many others
(32,33,34).
Indeed, structural analysis of sequence domains shows that CRFG is related
distantly to novel GTP-binding proteins that map to the major
histocompatibility complex class I region
(35) and renin-angiotensin
system. Although sequence analysis identifies high probability of at least two
coiled regions (amino acids 400 to 450 and 550 to 570), no other features or
similarities to other known proteins were identified. The closest gene related
to CRFG seems to be DRG, which is also a GTP-binding protein with unknown
function that interacts with the oncoproteins SCL and TAL
(36,37,38).
If CRFG is functionally related to DRG, then perhaps it may be involved in
regulating proliferation. Consistent with this hypothesis, CRFG is localized
to distinct structures in the nucleus, and its expression is increased in
cells after serum stimulation. However, CRFG failed to colocalize with C23,
also known as nucleolin, which is involved in ribosome assembly
(39). Therefore, CRFG is
probably not involved in C23-dependent processes of ribosome biogenesis.
Colocalizations with many of the other identified nuclear proteins may clarify
in which nuclear events CRFG takes part.
In summary, CRFG mRNA is expressed selectively in the outer medulla of rats, which is reduced dramatically in the development of renal disease with detectable proteinuria, regardless of the initial cause. This nuclear protein contains a GTP-binding domain that may affect nuclear events involved in cell growth and proliferation that are pertinent to renal tubular function. The expression and the role of CRFG in human development and disease remain to be determined.
| Acknowledgments |
|---|
| Footnotes |
|---|
| References |
|---|
|
|
|---|
This article has been cited by other articles:
![]() |
Y. R. Lapik, J. M. Misra, L. F. Lau, and D. G. Pestov Restricting Conformational Flexibility of the Switch II Region Creates a Dominant-Inhibitory Phenotype in Obg GTPase Nog1 Mol. Cell. Biol., November 1, 2007; 27(21): 7735 - 7744. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. N. Changolkar, C. Costanzi, N. A. Leu, D. Chen, K. J. McLaughlin, and J. R. Pehrson Developmental Changes in Histone macroH2A1-Mediated Gene Regulation Mol. Cell. Biol., April 1, 2007; 27(7): 2758 - 2764. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. M. Seubert, F. Xu, J. P. Graves, J. B. Collins, S. O. Sieber, R. S. Paules, D. L. Kroetz, and D. C. Zeldin Differential renal gene expression in prehypertensive and hypertensive spontaneously hypertensive rats Am J Physiol Renal Physiol, September 1, 2005; 289(3): F552 - F561. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Morrison, A. J. Henzing, O. N. Jensen, N. Osheroff, H. Dodson, S. E. Kandels-Lewis, R. R. Adams, and W. C. Earnshaw Proteomic analysis of human metaphase chromosomes reveals topoisomerase II alpha as an Aurora B substrate Nucleic Acids Res., December 1, 2002; 30(23): 5318 - 5327. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
HOME
CURRENT ISSUE
ARCHIVES
JASN Express
ONLINE SUBMISSION
AUTHOR INFO
EDITORIAL BOARD SUBSCRIBE FEEDBACK ALERTS HELP |