Engraftment and Differentiation of Human Metanephroi into Functional Mature Nephrons after Transplantation into Mice Is Accompanied by a Profile of Gene Expression Similar to Normal Human Kidney Development
Benjamin Dekel*,
Ninette Amariglio,
Naftali Kaminski,
Arnon Schwartz,
Elinor Goshen,
Fabian D. Arditti,
Ilan Tsarfaty||,
Justen H. Passwell*,
Yair Reisner and
Gideon Rechavi
Departments of *Pediatrics, Pediatric Hemato-oncology and Functional Genomics Unit, and Nuclear Medicine, Sheba Medical Center, Tel Hashomer, Israel; Department of Immunology, Weizmann Institute of Science, Rehovot, Israel; and ||Department of Human Microbiology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel.
Correspondence to Dr. Benjamin Dekel, Department of Pediatrics, Sheba Medical Center, Tel Hashomer, Israel 52621. Phone: 972-3-530-2445; Fax: 972-8-9344141; E-mail: bmdekel{at}wicc.weizmann.ac.il
ABSTRACT. Metanephroi, the embryonic precursors of the adultkidney, can be induced in vivo to grow and develop. Despitetheir potential clinical utility for transplantation, the abilityof human metanephroi to differentiate after transplantationinto functional mature nephrons is mostly unknown. To addressthis, 70-d human metanephroi were transplanted into NOD/SCIDmice; global gene expression patterns that underlie developmentof human metanephric transplants were analyzed and comparedwith normal human kidney development. In addition, functionalityof the grafts was assessed by dimercaptosuccinic acid radioisotopescans at different times after transplantation. The resultsof hybridization to cDNA arrays when RNA was derived from normalhuman kidneys at 8, 12, 16, and 20 wk gestation demonstratedthat a subset of 240 genes changed substantially with time.The induced genes can be classified as cell cycle regulators,transcription and growth factors, and signaling, transport,adhesion, and extracellular matrix molecules. Strikingly, clusteringanalysis of global gene expression at 2, 6, and 10 wk aftermetanephric transplantation revealed an expression profile thatcharacterizes normal human kidney development. Moreover, maturationof the transplants was accompanied by an increased uptake ofdimercaptosuccinic acid. Nevertheless, expression levels ofspecific genes were mostly found to be suppressed in the transplantscompared with the normal kidneys. These data provide insightsinto human kidney development and support the possibility ofthe transplantability of human metanephroi. Understanding ofthe molecular regulation of the transplanted developing metanephroimight lead to the development of strategies aimed at increasingthe levels of specific genes, nephron endowment, and graft function.
Kidney transplantation has been one of the major medical advancesof the past 30 yr; however, it is becoming increasingly apparentthat the supply of organs is limited and will not improve withcurrent medical practice. The morbidity, poor quality of life,and extensive burden on the health of patients receiving chronicdialysis are major factors that prompt the development of alternativesfor patients with chronic renal failure. The possible use ofhuman renal precursor cells or tissue (i.e., human metanephroi)seems worthy of consideration but has hardly been explored.
Several reports have documented development of murine metanephroiafter transplantation (13). Rogers et al.(4) studiedthe feasibility of transplanting murine metanephroi in the omentumof rat hosts sufficiently near one of the ureters so as to renderconnection between the transplant and the hosts urinesystem possible. When the murine transplants were connectedto the hosts urine system, they were shown to be functional,and clear inulin was infused into the hosts circulation.Such anastomosis was made possible after transplanted murinemetanephroi had developed.
We have previously established human adult and fetal kidneygrafts in immunodeficient rat hosts (5,6). The fetal transplantsachieved rapid growth and long-term survival in vivo. Moreover,when studying the transplant immunology of the human kidneyprecursors, our small-animal model demonstrated a reduced alloimmuneresponse of allogeneic human peripheral blood mononuclear cellsto the metanephric transplants when compared with that of transplantsof adult kidney tissue (57). Thus, the immunologic advantageof human metanephroi over the adult kidney in avoiding graftrejection was shown (8). Clearly, in vivo differentiation ofhuman metanephric transplants into functional mature nephronsis critical if such were to be applicable as donor tissue inclinical practice. Moreover, a better understanding of the molecularsignals that stimulate this process might lead to improvementin the differentiative potential after transplantation.
Therefore, in this report, with the use of cDNA arrays, we haveexamined the global mRNA expression of cell cycle and DNA replicationregulators, transcription and growth factors, and signaling,transport, and adhesion and extracellular matrix (ECM) moleculesin human fetal kidneys at various times during gestation. Moreover,we were able to monitor gene expression patterns in vivo inour model of transplanted human metanephroi and to determineto what extent they resemble those involved in the inductionof the normal kidney or the transformation into an embryonickidney malignancy (i.e., a Wilms tumor). In addition, we assessedthe functional capacity of the newly formed nephrons in thedeveloping human metanephric transplants.
Mice
NOD/SCID mice were bred and maintained under defined flora conditionsat the Weizmann Institute of Science (Rehovot, Israel) in sterilemicroisolator cages. All of the experiments were approved bythe animal-care committee of the Weizmann Institute. Host miceused for transplantation of metanephroi were 8 wk old.
Human Fetal Kidneys
Normal human kidneys at 8, 12, 16, and 20 wk gestation wereobtained after curettage of elective abortions. Studies withembryonic kidney tissue were approved by the Helsinki ethicalcommittee. The kidneys were fixed in 10% paraffin, sectioned,and mounted on slides coated with poly-L-lysine, and sectionswere stained with hematoxylin and eosin for histologic evaluation.
Establishment of Human Kidney Grafts into NOD/SCID Mice
Human embryonic kidneys, 70 d gestation, were kept in sterileconditions at 4°C (for approximately 2 h) in either RPMI1640 or Dulbeccos modified Eagles medium containing10% fetal calf serum (Biological Industries, Bet HaEmek, Israel).Transplantation of the human metanephroi was performed withthe mice under general anesthesia (2.5% Avertin in phosphate-bufferedsaline, 10 ml/kg intraperitoneally). Both kidneys were exposedthrough a bilateral incision. A 1.5-mm incision was made atthe caudal end of the kidney capsule, and a 1-mm3 fragment ofhuman kidney was implanted under the left capsule. Mice thatreceived transplants were treated postoperatively with ciprofloxacinin their drinking water for 7 d. Animals were killed at 2, 6,and 10 wk after transplant. Human renal tissue was initiallyassessed for engraftment by macroscopic examination (size, color)of the transplants at the subcapsular site. Kidneys and theircapsules were then removed and fixed in 10% paraffin. Humangrafts were sectioned and mounted on slides coated with poly-L-lysine,and sections were stained with hematoxylin and eosin for histologicevaluation.
RNA Preparation
Normal human embryonic kidney tissue and human embryonic kidneygrafts dissected carefully from the subcapsular site of NOD/SCIDmice were homogenized with a glass-Teflon tissue tearer in 1ml of Tri-reagent (Molecular Research Center, Cincinnati, OH).RNA was isolated as described previously (9).
cDNA Array Hybridization
We used cDNA arrays of human cDNA spotted on a nylon membrane(Atlas filter arrays; Clontech, Palo Alto, CA) as previouslydescribed (9). We used the human 1.2 expression arrays (broad-coveragearrays), which contain 1176 cDNA. The filters also include housekeepingcontrol cDNA. A complete list of the cDNA and controls and theiraccession numbers is available on the Internet (http://www.clontech.com/atlas/genelists/index.html).
Total RNA were treated with DNAse I according to the manufacturersinstructions and used for cDNA synthesis. A 3-µl mix containing5 µg of total RNA and 1 µl of 10x cDNA synthesisprimer mix (specific for each filter array, provided by Clontech)was incubated at 70°C for 2 min, followed by incubationat 48°C for 2 min. To this mix, 8 µl of master mixcontaining 2 µl 5x reaction buffer, 1 µl 10x dNTPmix, 3.5 µl [32P]-dATP (3000 Ci/mmol, 10 mCi/ml; AmershamPharmacia Biotech, Buckingham, UK), 0.5 µl 100 mM dithiothreitol,and 1 µl Moloney murine leukemia virus reverse transcriptase(50 U/µl) was added, mixed, and incubated for 25 min at48°C. The reaction was terminated by adding 1 µl of10x termination mix at room temperature.
The radioactively labeled cDNA mix was fractionated on a ChromaSpin-200 column (Clontech), and fractions that comprised thefirst peak of radioactivity were pooled for each cDNA synthesisreaction. In each set of hybridization, equal counts were takenfor control and experimental labeled cDNA probes. The labeledcDNA probe was then mixed with 1/10 volume of 10x denaturingsolution (1 M NaOH, 10 mM ethylenediaminetetraacetate) and incubatedat 68°C for 20 min, followed by the addition of 5 µl(1 µg/µl) of cot-1 DNA and an equal volume of 2xneutralizing solution (1 M NaH2PO4, pH 7.0), and incubated at68°C for 10 min. Denatured, labeled cDNA was then addedto 5 ml of ExpressHyb solution (Clontech) with 1 mg of shearedsalmon sperm DNA (Sigma Chemical Co., St. Louis, MO) and mixed.This hybridization solution was added to the Atlas cDNA ExpressionArray membrane, which was prehybridized in 10 ml of ExpressHybhybridization solution at 68°C for 1 h. Hybridization proceededovernight at 68°C in a roller bottle. Membranes were washedonce with prewarmed 2x standard saline citrate/1% sodium dodecylsulfate for 30 min and once or twice with 0.5x standard salinecitrate/0.5% sodium dodecyl sulfate for 30 min at 68°C withconstant agitation. The membranes were exposed to Fuji (Tokyo,Japan) x-ray films at 70°C with intensifying screens.
Analysis of Hybridization Signals
The cDNA microarray autoradiograms were scanned, and the imageswere analyzed by AtlasImage software, version 1.05 (Clontech).The background was calculated by default external backgroundcalculation, which takes into consideration the background signalsat the blank space between the different panels of the arrays.Signal threshold was set as background-based signal threshold.The signal intensities were normalized globally by the sum method(AtlasImage; Clontech). A report of differentially expressedgenes was generated on the basis of ratio and intensity differences.
Reverse Transcriptase-PCR Amplification
Total RNA was determined, and 1 µg of total RNA was reverse-transcribedinto cDNA and amplified with the Access reverse transcriptase-PCRkit (Promega, Madison, WI) and with specific primers for humanneu-differentiation factor (NDF), homeobox protein hLim1, mitogen-activatedprotein kinase p38, kidney glomeruli chloride channel, and ourhousekeeping gene, ß-actin. The primers used wereas follows: 5'-ACC-ATC-AAG-CTC-TGC-GTG-ACT-G-3' (sense) and5'-GCA-GGT-CAG-TTC AGT-TCC-AGG-TC-3' (antisense) for ß-actin(310 bp); 5'-CAA-AGA-AGG-CAG-AGG-CAA-AG-3' (sense) and 5'-ACC-ACT-TGA-ATC-TGA-GAG-AGG-3'(antisense) for human NDF (340 bp); 5'-CGT-CGT-CTT-CTT-CTC-3'(sense) and 5'-CAG-GTT-GCA-TTT-ACA-TTC-3' (antisense) for humanLim1 (506 bp); 5'-CCC-AGG-AGT-CCG-TAA-GTA-G-3' (sense) and 5'-ACT-GGA-GAC-AGG-TTC-TTG-3'(antisense) for human mitogen-activated protein (p38) kinase(200 bp); and 5'-TGA-TGT-GAT-ATG-GCT-GCA-AG-3' (sense) and 5'-TGT-AGG-CAA-AGG-CTC-CCT-C-3'(antisense) for human kidney chloride channel (700 bp). Afteramplification, the sample was separated on an agarose gel containingethidium bromide, and bands were visualized and photographedwith an ultraviolet transilluminator. The image densities weremeasured with Image software, version 1.62 (National Institutesof Health, Bethesda, MD), and semiquantitative results wereexpressed as a ratio of each reverse transcriptase-PCR productto ß-actin density (10). Three independent experimentswere performed for each PCR determination.
Immunohistology
Immunohistochemistry for the stem cell leukemia (SCL) proteinwas performed via a monoclonal anti-SCL/TAL1 antibody (2TL242;provided by Dr. Karen Pulford, Oxford, England, UK). Briefly,5-µm sections of were mounted on Super Frost/Plus glass(Menzel, Glazer, Braunschweig, Germany) and processed by thelabeled streptavidin-biotin method with a Histostain Plus kit(Zymed, San Francisco, CA). Heat-induced antigen retrieval wasperformed by controlled microwave treatment with a model H2800processor (Energy Bean Sciences, Agawan, MA) in 10 mM citratebuffer, pH 6.0, for 10 min at 97°C. The sections were treatedwith 3% H2O2 for 5 min. Consecutive sections were incubatedfor 1 h with the 2TL242 antibody. Negative control incubationswere performed by substituting nonimmune serum for the primaryantibody (the control sections were entirely negative).
Biotinylated second antibody was applied for 10 min, followedby incubation with horseradish peroxidase-conjugated streptavidinfor 10 min. After each incubation, the slides were thoroughlywashed with OptiMax wash buffer (Biogenex, San Ramon, CA). Theimmunoreaction was visualized by a horseradish peroxidase-basedchromogen/substrate system, including diaminobenzidine (brown)chromogen (liquid diaminobenzidine substrate kit; Zymed). Thesections were then counterstained with Mayers hematoxylin,dehydrated, and mounted for microscopic examination.
Statistical Analyses
Comparisons between groups were evaluated by the unpaired ttest. Data were expressed as mean ± SEM and were consideredstatistically significant at P 0.05.
Dimercaptosuccinic Acid Radioisotope Scans after Intra-abdominal Transplantation of Human Metanephroi
In some experiments, metanephroi were implanted and sutured(5-0 suture) onto the testicular fat of NOD/SCID mice whilethey were under general anesthesia (2.5% Avertin in phosphate-bufferedsaline, 10 ml/kg intraperitoneally). During the same surgery,host mice had one kidney removed. Dimercaptosuccinic acid (DMSA)scans were performed at different times after transplantation.Briefly, each mouse was injected intravenous in a tail veinwith 1 x 10-3 mCi technetium-99m DMSA. Animals were sedated2 h after injection with 2.5% Avertin in phosphate-bufferedsaline, 10 ml/kg intraperitoneally. Whole-body images were acquiredin the posterior view on a gamma camera equipped with a pinholecollimator (Elscint Sp4, Haifa, Israel). Images were acquiredto a total of 100 K. After imaging, animals were killed, andthe transplants were excised and imaged. The mice were furtherimaged in the same manner after the transplants had been removed.
Histology of Human Metanephric Transplants Established in NOD/SCID Mice Figure 1 illustrates the histology of normal human kidneys at10 and 20 wk gestation (Figure 1, A through C), as well as ofhuman metanephroi derived from 70-d-old aborted fetuses 10 wkafter transplant into an immunodeficient host (Figure 1, D and E).The human metanephroi, the precursor of the adult kidney,appears at 5 wk gestation, when it consists of nephrogenic mesenchyme,which condenses around the ureteric bud epithelium (Figure 1, A and B).Mutually inductive events cause the ureteric bud tobranch serially to form the collecting ducts and urotheliumof the renal pelvis, ureter, and bladder trigone. The renalmesenchyme undergoes epithelial conversion to form early nephronprecursors (comma- and S-shaped bodies) and eventually maturenephrons (glomeruli, proximal tubules, loops of Henle) (Figure 1C).
Figure 1. Photomicrographs of hematoxylin and eosin-stained sections illustrating the histology of normal renal development and of transplanted human metanephroi. Developing human kidneys are shown at 10 wk gestation (A and B) and 20 wk gestation (C), and human metanephroi are shown 10 wk after transplant into host mice (D and E). (A) Embryonic kidney showing ureteric buds and peripheral branches (ub) surrounded by condensing mesenchyme (original magnification, x10). (B) Higher-power view (original magnification, x20) of ureteric bud branches (ub) surrounded by condensing mesenchyme (mc) and early nephron precursors, including S-shaped bodies (s). (C) Fetal kidney showing well developed glomeruli (g) and tubuli (original magnification, x10). (D) Overview of the developed transplant showing layers of human glomeruli and tubuli, and nephrogenesis in the outer rim of the transplant (original magnification, x40). (E and F) Higher-power views (original magnification, x20 and x40, respectively) of human glomeruli (g), proximal tubules (p), and distal tubule (d) in the transplant.
The first human metanephric glomeruli form at 9 wk. Branchingand nephrogenesis continue to occur in the outer rim of thekidney, the nephrogenic cortex, until 34 wk (11). As shown inFigure 1, D through E, the human metanephroi transplanted underthe kidney capsule of NOD/SCID mice undergo growth and differentiationwith time, including the appearance of new layers of matureglomeruli and tubuli. We also observed a higher proportion ofmesenchyme in the developing transplants compared with normalkidney (Figure 1). The appearance of increasing numbers of humannephrons indicated that nephron development or endowment isregulated in the developing metanephric transplants.
Functionality of Human Metanephric Transplants Established in NOD/SCID Mice
After establishment of human metanephric transplants in mice,we assessed their tubular function with 99technetium-DMSA renography.We performed intra-abdominal rather than renal subcapsular transplantationto discriminate between uptake of native kidney and transplantedmetanephroi (see Materials and Methods). DMSA was administeredat different time points after transplant, and animals werethen killed. Table 1 summarizes the DMSA experiments. We couldnot detect DMSA in the younger transplants (3 to 4 wk aftertransplant). However, positive uptake was clearly demonstratedin the older metanephric grafts (8 to 10 wk after transplant)and declined upon their removal (Figure 2, A through C). Positiveuptake of DMSA was found only when unilateral nephrectomy wasperformed and not when both native kidneys were left intact(Table 1). This might be related to decreased perfusion of thetransplant (vascularized by peripheral vessels and not by end-to-endanastomosis) compared with the native kidneys (steal effect).Thus, maturation of the human metanephric transplants with time(3 to 10 wk) was associated with increased uptake of DMSA.
Figure 2. Renograms illustrating functional assessment of developing human metanephric transplants after intravenous injection of dimercaptosuccinic acid (DMSA) radioisotope. (A) Eight weeks after transplantation into abdomens of host mice. The whole mouse is displayed. k, host kidney; b, host bladder; t, human transplant. (B) After removal of the transplant, reduced intensity levels are now similar to background levels (circled). (C) Radioisotope uptake in the isolated transplant.
Profile of Gene Expression during Development of Normal and Transplanted Human Metanephroi
We determined temporal programs of gene expression during developmentof the normal human kidney and compared them to those of developinghuman embryonic kidney grafts. For human kidney development,cDNA arrays were used to analyze gene expression patterns innormal kidneys obtained at 8, 12, 16, and 20 wk gestation. Forthe transplantation experiments, human metanephroi originatingfrom a 70-d-old fetus were grafted under the kidney capsuleof NOD/SCID mice. Hybridization to cDNA arrays was then performedwhen RNA used for probes was derived from 2-, 6-, and 10 wk-oldmetanephric transplants (designated t12, t16, and t20 wk andcorresponding to human kidneys at 12, 16, and 20 wk gestation,respectively).
Figure 3 illustrates the results of hybridization to cDNA arrayswhen RNA used for probes was derived from the 12-, 16-, and20-wk-old kidneys as well as from the t12-, t16-, and t20-wktransplants. A representative section (all of the E coordinates)from the atlas human 1.2 array (Clontech) representing 196 cDNAthat profile transcription factors and DNA-binding proteins,ECM and adhesion proteins, cell surface antigens, and growthfactors is shown. Expression levels of 1176 genes in 12-, 16-,20-, t12-, t16-, and t20-wk kidneys were determined againstbaseline 8-wk-old kidneys (Figure 3G), as assessed by screeningthe differences in hybridization results with AtlasImage software.Only when expression levels deviated from that in the 8-wk-oldkidneys by a factor >2.0 or <0.5 in at least 2 of thesamples from the 12-, 16-, and 20-wk old kidneys or from thet12-, t16-, and t20-wk transplants were they considered substantial.
Figure 3. Radiographs illustrating differential hybridization to cDNA profiling transcription factors, DNA-binding proteins, cell surface antigens, extracellular matrix and adhesion proteins, and growth factor receptors. RNA used for probes was derived from normal human kidneys at 12, 16, and 20 wk gestation (A through C) and from human metanephroi 2, 6, and 10 wk after transplantation (t12, t16, and t20 wk) (D through F). Note the upregulation of many genes in both normal and transplanted metanephroi profiles (black spots represent expressed genes) when compared with (G), where RNA was derived from 8-wk-old kidneys. (H) RNA used for probes was derived from a Wilms tumor. Note similar expression profile to that obtained for the embryonic 8-wk-old kidney (G).
This analysis identified a subset of 240 genes whose expressionchanged substantially in both normal and transplanted metanephroi.Only 20 genes changed in either the normal or transplanted kidneygroups according to the selection criteria. Thus, the majorityof genes induced during the maturation of the normal kidneyare found in the developing transplanted metanephroi. The completelist of significantly changed genes is available on the Internet(http://www.weizmann.ac.il/immunology/dekel/). These genes canbe grouped into categories on the basis of their functionalrole (Table 2).
One measure of the reliability of the changes we observed isinherent in the expression profiles of the genes. For most geneswhose expression levels changed, we could see a gradual changeover several time points, which thus effectively provided independentmeasurements for almost all of the observations. Furthermore,an additional check was provided by utilizing three separatesamples of RNA for three independent hybridizations to differentmacroarrays at each time (12, 16, 20, t12, t16, t20 wk). Forexample, an analysis of expression levels of multiple genesperformed with separate RNA samples from 12-wk kidneys showedgood correlation (Figure 4A). As an independent test, we measuredthe expression levels of several genes, NDF, homeobox proteinhLim1 (hLIM), mitogen-activated protein kinase p38 (MAPK), andkidney glomeruli chloride channel (CIC-5), one of which hasnever been described to be involved in kidney development (NDF)by means of a semiquantitative PCR assay (10). The expressionprofiles of the genes, as measured by these two independentmethods, were similar (Figure 4B). Moreover, the presence ofthe SCL gene, which has not yet been described in developingmetanephroi, was confirmed at the protein level with immunostaining(Figure 4C).
Figure 4. Reproducibility and verification of the macroarray data. (A) Bar graph illustrating the levels of multiple genes for 3 independent hybridizations comparing RNA isolated from human kidneys at 12 wk gestation. The ratio was calculated by comparison to the hybridization signals in the human kidneys at 8 wk gestation. (B) Line graph illustrating independent verification of the macroarray quantitation. Relative mRNA levels of the indicated genes (neu differentiation factor [NDF], homeobox protein hLim1 [hLIM], mitogen-activated protein kinase p38 [MAPK], and kidney chloride channel [CIC-5]) were measured with a semiquantitative reverse transcriptase-PCR (RT-PCR) assay (right) in the same samples that were used to prepare cDNA probes for macroarray hybridizations (left). The steady-state levels of mRNA measured by semiquantitative RT-PCR were normalized against the ß-actin mRNA control and plotted relative to the levels in normal 8-wk-old kidneys so that results could be compared with those from the macroarray hybridizations. (C) Micrograph illustrating verification of the presence of the stem cell leukemia (SCL) protein in the developing metanephroi. Immunostaining for human SCL in human kidneys at 12 wk gestation (left) and 18 wk gestation (right); note staining in mesenchymal cells (left, inset) and glomerular capillary loop (right, inset).
The 240 genes that passed our filtering parameters were furtherselected for cluster analysis according to previously publishedparameters (1214). Strikingly, unbiased clustering ofthe experimental groups (human kidneys at 12, 16, and 20 wkgestation, and t12-, t16-, and t20-wk transplants) on the basisof the similarity of their expression profiles correspondedthe normal kidney samples with their respective metanephrictransplants (i.e., 12-t12, 16-t16, and 20-t20 wk) (Figure 5A).To determine the temporal changes of gene expression in normaland transplanted metanephroi, we applied a self-organizing mapalgorithm, previously described by Tamayo et al.(15), whereeach group of experiments was normalized independently. Impressively,the majority of the genes behaved similarly in both groups (Figure 5B).
Figure 5. Cluster analyses of gene expression profiles of normal and transplanted metanephroi. (A) Similarity index illustrating how experimental groups were clustered hierarchically on the basis of the similarity of their expression profiles by the procedure of Iyer et al.(13). Strikingly, the unbiased method clustered the normal kidneys with their corresponding metanephric transplants (i.e., 12-t12, 16-t16, and 20-t20 wk). (B) Self-organizing map algorithm applied to developing normal and transplanted metanephroi for the determination of temporal changes of global gene expression. For independent analysis of normal (left plot in each box) and transplanted kidneys (right plot in each box), the gene ratio was normalized against the 12- and t12-wk time points, respectively. Most genes (numbers are given in each box) were grouped in cluster 0 (c0) and cluster 3 (c3) (highlighted in yellow), demonstrating similar temporal expression profiles. (C and D) Pie diagrams illustrating temporal expression profiles and gene function. Genes in c1 and c3 were categorized into functional groups, and diagrams showing the percentage of genes belonging to each functional category were plotted for c1 (C) and c3 (D). ECM, extracellular matrix.
Thus, we identified in both normal and transplanted metanephroia cluster of genes (c0) that were downregulated with time (n= 103). This cluster included mostly genes associated with transcription,replication and DNA repair, cell cycle, neuronal development,growth, and signaling (Figure 5C). A second cluster (c3) consistedof genes that were upregulated throughout normal kidney andtransplant development (n = 92). Interestingly, this clustercontained mainly genes that function in cell adhesion and shapingof ECM, transport, metabolism, and protein turnover, as wellas in growth and signaling (Figure 5D). The temporal profilesof genes in clusters c1 (n = 26) and c2 (n = 19) were somewhatdifferent among normal and transplanted metanephroi. Genes inc1, which were initially diminished in the transplants, consistedof almost all categories, including signaling, transcription,cell cycle, growth and adhesion, and ECM (data not shown).
In contrast, c2 contained genes that were relatively upregulatedafter transplantation of metanephroi, most of which were relatedto cell and oxidative stress (9 of 19; glutathione-S-transferases1, 3, and 12, heat shock proteins 90, 27, 40, and 60 kD, andglutathione and thioredoxin reductase) or angiogenesis (5 of19; vascular endothelial growth factor [VEGF], VEGF receptors1 and 2, angiopoietin 1 receptor, and endothelial monocyte-activatingpolypeptide 2). Thus, our approach could not only determinesimilar global patterns of gene expression in both normal andtransplanted developing kidneys, but also could pinpoint setsof genes that are increased in the metanephric transplants andfall under specific functional categories.
Although cluster analysis provides for profiles of gene expressionand the behavior of groups of genes, it does not identify differencesat the level of a single gene. We therefore set out to determinedifferences between average mRNA levels of specific genes inthe normal and transplanted kidneys. An example of such an analysis,here applied to specific genes that function in transport andgrowth and whose expression changed substantially in the inductionof the normal and transplanted kidney, is illustrated in Figure 6.Analysis of genes that encode transport proteins (potassium[kv12] and chloride channel [ICLN] proteins, glucose [GLUT1],zinc, and Golgi transporters) demonstrated that although theyincreased steadily throughout development in both normal andtransplanted metanephroi, thus showing similar temporal expressionprofiles (see cluster c3), mRNA levels were significantly decreasedin the developed transplant (t20) compared with levels in thecorresponding kidney at 20 wk gestation (Figure 6).
Figure 6. Temporal expression profiles of specific genes encoding transporters (left column) and growth factors (right column) in normal and transplanted developing human metanephroi. Average intensity levels were determined in human kidneys at 12, 16, and 20 wk gestation (open squares) and in human metanephroi 2, 6, and 10 wk after transplantation (solid triangles). For each gene, intensity levels were normalized to its levels in the normal 8-wk-old kidneys. Three independent experiments were performed for each determination. *, P < 0.05 compared with mRNA level in corresponding transplant. PTN, pleiotrophin; GLUT1, glucose transporter 1; PDGFR, platelet-derived growth factor receptor; FGF7, fibroblast growth factor 7; ICLN, chloride channel protein; IGF-II, insulin growth factor 2; KV12, voltage-gated K(+) channel 12; RARB, retinoic acid receptor B.
Analysis of growth factor genes, which have recognized rolesin kidney development (pleiotrophin [PTN], platelet-derivedgrowth factor [PDGFRß] and retinoic acid [RARß]receptors, fibroblast [FGF7] and insulin [IGF-II] growth factors),allows for the determination of factors that possibly couldinduce transplanted cells to differentiate more efficientlyand improve nephron endowment. We found mostly reduced expressionlevels of these growth factors in the transplanted metanephroithroughout development, especially in the earlier time pointsafter transplantation (t12 and t16) (Figure 6). Furthermore,average expression levels of several genes, which are categorizedin different groups but are linked functionally, could alsobe compared. For instance, molecules that the actions of hepatocytegrowth factor (HGF) are dependent on the following (1619):HGF activator (growth), focal adhesion kinase (cell adhesion),follistatin, and activin-ß (ECM modifying); GRB-2and PLC (downstream signaling) were mostly suppressed in thetransplants (Figure 7) and therefore might benefit from a supplementof exogenous HGF. Thus, our approach could identify specificfactors involved in the differentiation of the embryonic transplants,including those that are relatively lacking at a given timepoint after transplantation.
Figure 7. Temporal expression profiles of specific genes encoding growth factors, adhesion and extracellular matrix, and signaling molecules related to the action of hepatocyte growth factor (HGF) in normal and transplanted developing human metanephroi. Average intensity levels were determined in human kidneys at 12, 16, and 20 wk gestation (open squares) and human metanephroi 2, 6, and 10 wk after transplantation (solid triangles). For each gene, intensity levels were normalized to its levels in the normal 8-wk-old kidneys. Three independent experiments were performed for each determination. *, P < 0.05 compared with mRNA level in corresponding transplant. FAK, focal adhesion kinase; GRB-2, growth factor to bound protein 2; PLC, phospholipase C.
Profile of Gene Expression Associated with the Development of Human Metanephric Transplants Does Not Mimic a Wilms Tumor Genotype
The results of hybridization to cDNA arrays when RNA used forprobes was derived from a Wilms tumor showed that unlike theembryonic transplants, the expression profile was not similarto that observed during normal human kidney development (Figure 3H).Thus, when Wilms tumor expression levels were normalizedto those of 8-wk-old kidneys, we could hardly detect the subsetsof genes shown in Table 2 and Figs. 3 and 5 to be induced innormal kidney development and subsequently in the developingmetanephric transplants. Moreover, genes that were not inducedor upregulated during normal kidney development were significantlyupregulated in the tumor specimen (Table 3). For instance, althoughthe ß-thymosins were expressed in the normal and transplantedmetanephroi, they were significantly upregulated only in theWilms tumor. These actin G-sequestering peptides, which regulateactin dynamics, have been shown to be overexpressed in neoplastictransformation (20). The clear differences in expression patternsimply that the embryonic kidney transplants do not acquire theWilms tumor genotype and undergo malignant transformation.
The clinical use of human embryonic kidney precursors will requirethe formation of adequate numbers of mature functional nephronsat specific sites for therapeutic effect. This requires insightinto regulation of metanephric growth and differentiation aftertransplantation and comparison to the normal developmental process.Thus, molecular aspects of normal human kidney development hadto be defined first. Despite extensive characterization of humankidney development, global expression profiles have not yetbeen elucidated.
We therefore took a fresh look at the temporal program associatedwith the induction of the human kidney by use of cDNA arraysrepresenting approximately 1200 known human genes. A coordinatedinduction of groups of genes was demonstrated during normalnephron formation, including DNA-binding and DNA transcriptionfactors, proto-oncongenes, signaling molecules, growth factorsor hormones and their receptors, cell adhesion and cytoskeletalmolecules, and ECM glycoproteins and receptors, and genes associatedwith transport and metabolism. Genes induced in this programencode products that can (1) participate in the molecular regulationof growth and branching of the ureteric duct (e.g., PTN, c-ret,EGF-R, FGF-R, BMP-2, BMP-4, TGF-ß, activin, follistatin,MMP-2) (17,2123); (2) participate in the molecular regulationof mesenchymal-to-epithelial conversion, formation of basallamina, cell polarization, and postinductive tubulogenesis (e.g.,hLim1, c-ret, c-ros-1, collagen type IV, integrins 6, 3, ß1,ZO-1, junction plakoglobin, BDNF/NT3) (2427); and (3)modulate angiogenesis, neovascularization, and glomerulogenesis(e.g., VEGF, VEGF-R, EMAP-2, angiopoietin-1 receptor, ephrinreceptors, PDGFR, PDGFRß, integrin 3) (25,2830).
In addition, we observed genes that have no recognized rolein any aspect of kidney development. The NDF gene, for instance,encodes a protein that acts either as a differentiation factorfor neuronal development or as a mitogen for mammary tumor cells(31). A recent in vitro study revealed that mesenchymally derivedHGF, kerotinacyte growth factor could activate autocrine NDFsignaling in their epithelial targets (32). Thus, the NDF proteinmight act in concert with these growth factors to direct epithelialproliferation, morphogenesis, and differentiation. Another exampleis the SCL gene. SCL, an established regulator of hematopoiesis,has been shown to play a pivotal role in hemangioblast formationand endothelial development (33). Thus, its presence in thedeveloping metanephroi might suggest a role in vasculogenesis.
Although many genes were induced during the developmental process,the biologic relevance of our data became apparent only afterassigning the genes into functional categories and clusteringthem into groups on the basis of the similarity of their temporalexpression profiles. We could demonstrate the induction of nonspecificregulatory replicative machinery (genes that function in cellcycle, replication and DNA repair, transcription, and growth)that characterizes early development, and thereafter the predominanceof groups of genes committed to a more specialized task andterminal differentiation (adhesion and ECM molecules, transporters,and genes related to metabolism and protein turnover). The generaloutline of these results is similar to that found by Stuartet al.(34) when describing the transcriptional program associatedwith rat kidney maturation. Given the complex nature of themolecular program we obtained for several stages of normal kidneygrowth, it is likely that redundancies among growth factorsand other molecules may exist in term of the role they playin kidney development in vivo.
Strikingly, many of the details of the molecular program requiredto generate and build a nephron after transplantation of humankidney precursors into living animals are similar, in a globalsense, to normal kidney induction. Comparison of temporal expressionprofiles demonstrated that the time course for development ofnormal human kidneys is applicable to that for development oftransplanted human metanephroi. Comparison of the expressionprofiles of developing metanephric transplants to a Wilms tumorspecimen revealed no similarity and reassured us that the threatof malignant transformation after transplantation of human embryonickidney precursors does not exist. A functional test devisedby intravenous administration of DMSA, a radioisotope knownto be extracted and secreted by mature, functional renal tubules,revealed that this function is maintained in the transplantedmetanephroi that had developed. Thus, after transplantation,human metanephroi integrate into host tissue microenvironment(including host blood vessels), survive, and function with availablegrowth and regulatory signals.
Nevertheless, our analysis has revealed several limitationsafter transplantation of human metanephroi. First, early aftergrafting, we found elevated levels of genes that function incell stress and angiogenesis, a response that might be relatedto both ischemia and neovascularization of the embryonic kidneygraft (35). Relative ischemia and consequent injury might accountfor the mostly low expression levels of human genes in the earlytime points after transplantation compared with normal kidneys.Minimizing the time to grafting or developing a preservationsystem for the human metanephroi (36) could reduce the magnitudeof ischemia. Second, the failure of genes encoding for varioustransporters to sufficiently increase their levels after transplantation,similar to normal kidney development, could possibly limit transplantfunction with time. Kim et al.(37) have demonstrated diminishedrenal expression of aquaporin water channels in rats with experimentalureteral obstruction. We have not yet been able to establishadequate anastomosis of the developing ureter of the human metanephrictransplants, and thus gene expression of at least some of thechannels in the transplants might have been similarly altered.
Finally, a comparison of a subset of genes encoding growth factorproteins, which have a recognized and important role in kidneydevelopment (21,24,25), detected mostly decreased transcriptlevels in the transplants compared with normal kidneys. Thereis a possibility that the xenogeneic microenvironment can compensateand support the differentiation of the transplanted human metanephroiby secreting diffusible proteins, or alternatively via growthfactors present in the peripheral circulation of host mice.Nevertheless, these growth factors can be easily administeredalone or in combination at a specific time after transplantationto further stimulate donor human metanephroi (Figure 6). Onthe basis of our results, an attractive option would be forinstance to administer insulin growth factor early after transplantationand administer HGF and fibroblast growth factor later on.
The concept of gene dosage and nephron development/endowmenthas emerged from recent studies (thoroughly reviewed by Clarkand Bertram [24]). These data demonstrate an enormous rangein nephron number in human kidneys and suggest that low nephronnumbers might be associated with acquired kidney disease (38,39).Several processes, which are regulated by specific genes, ultimatelygovern the number of nephrons during the development of humanmetanephroihence molecular regulation of nephron endowment.Furthermore, the dosage of specific genes also appears criticalto the establishment of adequate nephron endowment. Thus, iftransplanted human metanephroi maintain a temporal profile ofgene expression similar to normal kidney development and thedosage of specific genes is reduced, nephrogenesis evidentlypursues, but nephron endowment is limited. Future studies aimedat increasing gene dosage in the transplanted human metanephroicould determine whether nephron endowment improves.
We suggest that our approach of screening global gene expressionin transplanted differentiating embryonic kidney cells versusnormally developing cells might be relevant to other systemsthat follow the fate of embryonic cells after transplantationand elucidating factors that might drive them toward a specificlineage and organ. Furthermore, as far as directing embryoniccells solely toward human kidneys in vivo, our results indicatethat it might be worthwhile to first use human embryonic precursorsthat have already differentiated into the nephric lineage ratherthan more pluripotent cells (40).
Acknowledgments
This work was supported in part by an award from the AmericanPhysicians Fellowship (BD) and by the Arison Dorsman familysdonation to the Center of DNA Chips in Pediatric Oncology.
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Received for publication April 3, 2001.
Accepted for publication December 13, 2001.
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