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Basic Research
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Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract

Amelie T. van der Ven, Dervla M. Connaughton, Hadas Ityel, Nina Mann, Makiko Nakayama, Jing Chen, Asaf Vivante, Daw-yang Hwang, Julian Schulz, Daniela A. Braun, Johanna Magdalena Schmidt, David Schapiro, Ronen Schneider, Jillian K. Warejko, Ankana Daga, Amar J. Majmundar, Weizhen Tan, Tilman Jobst-Schwan, Tobias Hermle, Eugen Widmeier, Shazia Ashraf, Ali Amar, Charlotte A. Hoogstraaten, Hannah Hugo, Thomas M. Kitzler, Franziska Kause, Caroline M. Kolvenbach, Rufeng Dai, Leslie Spaneas, Kassaundra Amann, Deborah R. Stein, Michelle A. Baum, Michael J.G. Somers, Nancy M. Rodig, Michael A. Ferguson, Avram Z. Traum, Ghaleb H. Daouk, Radovan Bogdanović, Natasa Stajić, Neveen A. Soliman, Jameela A. Kari, Sherif El Desoky, Hanan M. Fathy, Danko Milosevic, Muna Al-Saffar, Hazem S. Awad, Loai A. Eid, Aravind Selvin, Prabha Senguttuvan, Simone Sanna-Cherchi, Heidi L. Rehm, Daniel G. MacArthur, Monkol Lek, Kristen M. Laricchia, Michael W. Wilson, Shrikant M. Mane, Richard P. Lifton, Richard S. Lee, Stuart B. Bauer, Weining Lu, Heiko M. Reutter, Velibor Tasic, Shirlee Shril and Friedhelm Hildebrandt
JASN September 2018, 29 (9) 2348-2361; DOI: https://doi.org/10.1681/ASN.2017121265
Amelie T. van der Ven
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Dervla M. Connaughton
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Hadas Ityel
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Nina Mann
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Makiko Nakayama
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Jing Chen
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Asaf Vivante
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Daw-yang Hwang
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Julian Schulz
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Daniela A. Braun
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Johanna Magdalena Schmidt
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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David Schapiro
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Ronen Schneider
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Jillian K. Warejko
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Ankana Daga
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Amar J. Majmundar
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Weizhen Tan
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Tilman Jobst-Schwan
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Tobias Hermle
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Eugen Widmeier
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Shazia Ashraf
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Ali Amar
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Charlotte A. Hoogstraaten
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Hannah Hugo
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Thomas M. Kitzler
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Franziska Kause
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Caroline M. Kolvenbach
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Rufeng Dai
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Leslie Spaneas
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Kassaundra Amann
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Deborah R. Stein
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Michelle A. Baum
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Michael J.G. Somers
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Nancy M. Rodig
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Michael A. Ferguson
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Avram Z. Traum
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Ghaleb H. Daouk
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Radovan Bogdanović
2Department of Pediatric Nephrology, Institute for Mother and Child Health Care, Belgrade, Serbia;
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Natasa Stajić
2Department of Pediatric Nephrology, Institute for Mother and Child Health Care, Belgrade, Serbia;
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Neveen A. Soliman
3Department of Pediatrics, Center of Pediatric Nephrology and Transplantation, Cairo University, Egypt;
4Egyptian Group for Orphan Renal Diseases, Cairo, Egypt;
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Jameela A. Kari
5Department of Pediatrics and
6Pediatric Nephrology Center of Excellence, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia;
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Sherif El Desoky
5Department of Pediatrics and
6Pediatric Nephrology Center of Excellence, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia;
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Hanan M. Fathy
7Pediatric Nephrology Unit, University of Alexandria, Alexandria, Egypt;
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Danko Milosevic
8University of Zagreb School of Medicine, University Hospital Center Zagreb, Zagreb, Croatia;
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Muna Al-Saffar
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
9United Arab Emirates University, Abu Dhabi, United Arab Emirates;
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Hazem S. Awad
10Pediatric Nephrology Department, Dubai Kidney Center Of Excellence, Dubai Hospital, Dubai, United Arab Emirates;
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Loai A. Eid
10Pediatric Nephrology Department, Dubai Kidney Center Of Excellence, Dubai Hospital, Dubai, United Arab Emirates;
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Aravind Selvin
11Department of Pediatric Nephrology, Institute of Child Health and Hospital for Children, The Tamil Nadu Dr. M.G.R. Medical University, Chennai, Tamil Nadu, India;
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Prabha Senguttuvan
12Department of Pediatric Nephrology, Dr. Mehta’s Multi-Specialty Hospital, Chennai, Tamil Nadu, India;
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Simone Sanna-Cherchi
13Division of Nephrology, Columbia University, New York, New York;
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Heidi L. Rehm
14Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts;
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Daniel G. MacArthur
14Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts;
15Program in Medical and Population Genetics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts;
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Monkol Lek
14Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts;
15Program in Medical and Population Genetics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts;
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Kristen M. Laricchia
15Program in Medical and Population Genetics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts;
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Michael W. Wilson
15Program in Medical and Population Genetics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts;
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Shrikant M. Mane
16Department of Genetics, Yale University School of Medicine, New Haven, Connecticut;
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Richard P. Lifton
16Department of Genetics, Yale University School of Medicine, New Haven, Connecticut;
17Rockefeller University, New York, New York;
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Richard S. Lee
18Department of Urology, Boston Children’s Hospital and Harvard Medical School, Boston, Massachusetts;
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Stuart B. Bauer
18Department of Urology, Boston Children’s Hospital and Harvard Medical School, Boston, Massachusetts;
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Weining Lu
19Renal Section, Department of Medicine and Pathology, Boston University Medical Center, Boston, Massachusetts;
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Heiko M. Reutter
20Institute of Human Genetics and
21Department of Neonatology and Pediatric Intensive Care, Children’s Hospital, University of Bonn, Bonn, Germany; and
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Velibor Tasic
22Medical Faculty Skopje, University Children’s Hospital, Skopje, Macedonia
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Shirlee Shril
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Friedhelm Hildebrandt
1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
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Article Information

vol. 29 no. 9 2348-2361
DOI 
https://doi.org/10.1681/ASN.2017121265
PubMed 
30143558

Published By 
American Society of Nephrology
Print ISSN 
1046-6673
Online ISSN 
1533-3450
History 
  • Received for publication December 8, 2017
  • Accepted for publication June 11, 2018
  • Published online August 31, 2018.

Article Versions

  • Earlier version (August 24, 2018 - 05:40).
  • You are viewing the most recent version of this article.
Copyright & Usage 
Copyright © 2018 by the American Society of Nephrology

Author Information

  1. Amelie T. van der Ven1,
  2. Dervla M. Connaughton1,
  3. Hadas Ityel1,
  4. Nina Mann1,
  5. Makiko Nakayama1,
  6. Jing Chen1,
  7. Asaf Vivante1,
  8. Daw-yang Hwang1,
  9. Julian Schulz1,
  10. Daniela A. Braun1,
  11. Johanna Magdalena Schmidt1,
  12. David Schapiro1,
  13. Ronen Schneider1,
  14. Jillian K. Warejko1,
  15. Ankana Daga1,
  16. Amar J. Majmundar1,
  17. Weizhen Tan1,
  18. Tilman Jobst-Schwan1,
  19. Tobias Hermle1,
  20. Eugen Widmeier1,
  21. Shazia Ashraf1,
  22. Ali Amar1,
  23. Charlotte A. Hoogstraaten1,
  24. Hannah Hugo1,
  25. Thomas M. Kitzler1,
  26. Franziska Kause1,
  27. Caroline M. Kolvenbach1,
  28. Rufeng Dai1,
  29. Leslie Spaneas1,
  30. Kassaundra Amann1,
  31. Deborah R. Stein1,
  32. Michelle A. Baum1,
  33. Michael J.G. Somers1,
  34. Nancy M. Rodig1,
  35. Michael A. Ferguson1,
  36. Avram Z. Traum1,
  37. Ghaleb H. Daouk1,
  38. Radovan Bogdanović2,
  39. Natasa Stajić2,
  40. Neveen A. Soliman3,4,
  41. Jameela A. Kari5,6,
  42. Sherif El Desoky5,6,
  43. Hanan M. Fathy7,
  44. Danko Milosevic8,
  45. Muna Al-Saffar1,9,
  46. Hazem S. Awad10,
  47. Loai A. Eid10,
  48. Aravind Selvin11,
  49. Prabha Senguttuvan12,
  50. Simone Sanna-Cherchi13,
  51. Heidi L. Rehm14,
  52. Daniel G. MacArthur14,15,
  53. Monkol Lek14,15,
  54. Kristen M. Laricchia15,
  55. Michael W. Wilson15,
  56. Shrikant M. Mane16,
  57. Richard P. Lifton16,17,
  58. Richard S. Lee18,
  59. Stuart B. Bauer18,
  60. Weining Lu19,
  61. Heiko M. Reutter20,21,
  62. Velibor Tasic22,
  63. Shirlee Shril1 and
  64. Friedhelm Hildebrandt1
  1. 1Department of Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts;
  2. 2Department of Pediatric Nephrology, Institute for Mother and Child Health Care, Belgrade, Serbia;
  3. 3Department of Pediatrics, Center of Pediatric Nephrology and Transplantation, Cairo University, Egypt;
  4. 4Egyptian Group for Orphan Renal Diseases, Cairo, Egypt;
  5. 5Department of Pediatrics and
  6. 6Pediatric Nephrology Center of Excellence, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia;
  7. 7Pediatric Nephrology Unit, University of Alexandria, Alexandria, Egypt;
  8. 8University of Zagreb School of Medicine, University Hospital Center Zagreb, Zagreb, Croatia;
  9. 9United Arab Emirates University, Abu Dhabi, United Arab Emirates;
  10. 10Pediatric Nephrology Department, Dubai Kidney Center Of Excellence, Dubai Hospital, Dubai, United Arab Emirates;
  11. 11Department of Pediatric Nephrology, Institute of Child Health and Hospital for Children, The Tamil Nadu Dr. M.G.R. Medical University, Chennai, Tamil Nadu, India;
  12. 12Department of Pediatric Nephrology, Dr. Mehta’s Multi-Specialty Hospital, Chennai, Tamil Nadu, India;
  13. 13Division of Nephrology, Columbia University, New York, New York;
  14. 14Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts;
  15. 15Program in Medical and Population Genetics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts;
  16. 16Department of Genetics, Yale University School of Medicine, New Haven, Connecticut;
  17. 17Rockefeller University, New York, New York;
  18. 18Department of Urology, Boston Children’s Hospital and Harvard Medical School, Boston, Massachusetts;
  19. 19Renal Section, Department of Medicine and Pathology, Boston University Medical Center, Boston, Massachusetts;
  20. 20Institute of Human Genetics and
  21. 21Department of Neonatology and Pediatric Intensive Care, Children’s Hospital, University of Bonn, Bonn, Germany; and
  22. 22Medical Faculty Skopje, University Children’s Hospital, Skopje, Macedonia
  1. Correspondence:
    Prof. Friedhelm Hildebrandt, Division of Nephrology, Boston Children’s Hospital, 300 Longwood Avenue, Boston, MA 02115. Email: friedhelm.hildebrandt{at}childrens.harvard.edu
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Journal of the American Society of Nephrology: 29 (9)
Journal of the American Society of Nephrology
Vol. 29, Issue 9
September 2018
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Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract
Amelie T. van der Ven, Dervla M. Connaughton, Hadas Ityel, Nina Mann, Makiko Nakayama, Jing Chen, Asaf Vivante, Daw-yang Hwang, Julian Schulz, Daniela A. Braun, Johanna Magdalena Schmidt, David Schapiro, Ronen Schneider, Jillian K. Warejko, Ankana Daga, Amar J. Majmundar, Weizhen Tan, Tilman Jobst-Schwan, Tobias Hermle, Eugen Widmeier, Shazia Ashraf, Ali Amar, Charlotte A. Hoogstraaten, Hannah Hugo, Thomas M. Kitzler, Franziska Kause, Caroline M. Kolvenbach, Rufeng Dai, Leslie Spaneas, Kassaundra Amann, Deborah R. Stein, Michelle A. Baum, Michael J.G. Somers, Nancy M. Rodig, Michael A. Ferguson, Avram Z. Traum, Ghaleb H. Daouk, Radovan Bogdanović, Natasa Stajić, Neveen A. Soliman, Jameela A. Kari, Sherif El Desoky, Hanan M. Fathy, Danko Milosevic, Muna Al-Saffar, Hazem S. Awad, Loai A. Eid, Aravind Selvin, Prabha Senguttuvan, Simone Sanna-Cherchi, Heidi L. Rehm, Daniel G. MacArthur, Monkol Lek, Kristen M. Laricchia, Michael W. Wilson, Shrikant M. Mane, Richard P. Lifton, Richard S. Lee, Stuart B. Bauer, Weining Lu, Heiko M. Reutter, Velibor Tasic, Shirlee Shril, Friedhelm Hildebrandt
JASN Sep 2018, 29 (9) 2348-2361; DOI: 10.1681/ASN.2017121265

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Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract
Amelie T. van der Ven, Dervla M. Connaughton, Hadas Ityel, Nina Mann, Makiko Nakayama, Jing Chen, Asaf Vivante, Daw-yang Hwang, Julian Schulz, Daniela A. Braun, Johanna Magdalena Schmidt, David Schapiro, Ronen Schneider, Jillian K. Warejko, Ankana Daga, Amar J. Majmundar, Weizhen Tan, Tilman Jobst-Schwan, Tobias Hermle, Eugen Widmeier, Shazia Ashraf, Ali Amar, Charlotte A. Hoogstraaten, Hannah Hugo, Thomas M. Kitzler, Franziska Kause, Caroline M. Kolvenbach, Rufeng Dai, Leslie Spaneas, Kassaundra Amann, Deborah R. Stein, Michelle A. Baum, Michael J.G. Somers, Nancy M. Rodig, Michael A. Ferguson, Avram Z. Traum, Ghaleb H. Daouk, Radovan Bogdanović, Natasa Stajić, Neveen A. Soliman, Jameela A. Kari, Sherif El Desoky, Hanan M. Fathy, Danko Milosevic, Muna Al-Saffar, Hazem S. Awad, Loai A. Eid, Aravind Selvin, Prabha Senguttuvan, Simone Sanna-Cherchi, Heidi L. Rehm, Daniel G. MacArthur, Monkol Lek, Kristen M. Laricchia, Michael W. Wilson, Shrikant M. Mane, Richard P. Lifton, Richard S. Lee, Stuart B. Bauer, Weining Lu, Heiko M. Reutter, Velibor Tasic, Shirlee Shril, Friedhelm Hildebrandt
JASN Sep 2018, 29 (9) 2348-2361; DOI: 10.1681/ASN.2017121265
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  • Changes in NAD and Lipid Metabolism Drive Acidosis-Induced Acute Kidney Injury
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  • CRISPR/Cas9 targeting Ttc30a mimics ciliary chondrodysplasia with polycystic kidney disease
  • Clinical Genetic Screening in Adult Patients with Kidney Disease
  • Deciphering congenital anomalies for the next generation
  • Beyond Panel-Based Testing: Exome Analysis Increases Sensitivity for Diagnosis of Genetic Kidney Disease
  • Pilot Study of Return of Genetic Results to Patients in Adult Nephrology
  • A Primer on Congenital Anomalies of the Kidneys and Urinary Tracts (CAKUT)
  • Cystin gene mutations cause autosomal recessive polycystic kidney disease associated with altered Myc expression
  • Deletion in the Cobalamin Synthetase W Domain-Containing Protein 1 Gene Is associated with Congenital Anomalies of the Kidney and Urinary Tract
  • DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract
  • Whole-Exome Sequencing Enables a Precision Medicine Approach for Kidney Transplant Recipients
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Keywords

  • Congenital Anomalies of the Kidney and Urinary Tract (CAKUT)
  • Whole Exome Sequencing (WES)
  • Vesico-ureteral Reflux (VUR)
  • monogenic disease causation
  • renal developmental gene

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