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Clinical Research
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Comprehensive Search for Novel Circulating miRNAs and Axon Guidance Pathway Proteins Associated with Risk of ESKD in Diabetes

Eiichiro Satake, Pierre-Jean Saulnier, Hiroki Kobayashi, Manoj K. Gupta, Helen C. Looker, Jonathan M. Wilson, Zaipul I. Md Dom, Katsuhito Ihara, Kristina O’Neil, Bozena Krolewski, Caterina Pipino, Meda E. Pavkov, Viji Nair, Markus Bitzer, Monika A. Niewczas, Matthias Kretzler, Michael Mauer, Alessandro Doria, Behzad Najafian, Rohit N. Kulkarni, Kevin L. Duffin, Marcus G. Pezzolesi, C. Ronald Kahn, Robert G. Nelson and Andrzej S. Krolewski
JASN September 2021, 32 (9) 2331-2351; DOI: https://doi.org/10.1681/ASN.2021010105
Eiichiro Satake
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Pierre-Jean Saulnier
3Chronic Kidney Disease Section, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, Arizona
4Poitiers University Hospital, University of Poitiers, Institut National de la Santé et de la Recherche Médicale (INSERM), Clinical Investigation Center CIC1402, Poitiers, France
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Hiroki Kobayashi
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Manoj K. Gupta
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Helen C. Looker
3Chronic Kidney Disease Section, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, Arizona
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Jonathan M. Wilson
5Diabetes and Complication Department, Lilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana
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Zaipul I. Md Dom
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Katsuhito Ihara
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Kristina O’Neil
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Bozena Krolewski
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Caterina Pipino
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
6Department of Medical, Oral and Biotechnological Sciences, Center for Advanced Studies and Technology (CAST), University G. d’Annunzio, Chieti, Italy
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Meda E. Pavkov
7Division of Diabetes Translation, Centers for Disease Control and Prevention, Atlanta, Georgia
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Viji Nair
8Nephrology/Internal Medicine and Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan
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Markus Bitzer
8Nephrology/Internal Medicine and Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan
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Monika A. Niewczas
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Matthias Kretzler
8Nephrology/Internal Medicine and Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan
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Michael Mauer
9Department of Pediatrics and Medicine, University of Minnesota, Minneapolis, Minnesota
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Alessandro Doria
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Behzad Najafian
10Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington
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Rohit N. Kulkarni
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Kevin L. Duffin
5Diabetes and Complication Department, Lilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana
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Marcus G. Pezzolesi
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
11Division of Nephrology and Hypertension, University of Utah, Salt Lake City, Utah
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C. Ronald Kahn
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Robert G. Nelson
3Chronic Kidney Disease Section, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, Arizona
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Andrzej S. Krolewski
1Research Division, Joslin Diabetes Center, Boston, Massachusetts
2Department of Medicine, Harvard Medical School, Boston, Massachusetts
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Significance Statement

Mechanisms underlying the progression of diabetic kidney disease to ESKD are not fully understood. Through profiling of circulating microRNAs (miRNAs) and proteins in individuals with type 1 and type 2 diabetes from four independent cohorts, the authors identified a signature of 17 miRNAs and six axon guidance pathway proteins that were robustly associated with severity of early structural lesions in kidney biopsy specimens and with an increased 10-year risk of ESKD. The study reveals novel mechanisms and proteins that govern progression to ESKD and point to the importance of systemic factors in the development of diabetic kidney disease. Some of the circulating miRNAs and axon guidance pathway proteins represent potential targets for new therapies to prevent and treat this condition.

Abstract

Background Mechanisms underlying the pro gression of diabetic kidney disease to ESKD are not fully understood.

Methods We performed global microRNA (miRNA) analysis on plasma from two cohorts consisting of 375 individuals with type 1 and type 2 diabetes with late diabetic kidney disease, and targeted proteomics analysis on plasma from four cohorts consisting of 746 individuals with late and early diabetic kidney disease. We examined structural lesions in kidney biopsy specimens from the 105 individuals with early diabetic kidney disease. Human umbilical vein endothelial cells were used to assess the effects of miRNA mimics or inhibitors on regulation of candidate proteins.

Results In the late diabetic kidney disease cohorts, we identified 17 circulating miRNAs, represented by four exemplars (miR-1287-5p, miR-197-5p, miR-339-5p, and miR-328-3p), that were strongly associated with 10-year risk of ESKD. These miRNAs targeted proteins in the axon guidance pathway. Circulating levels of six of these proteins—most notably, EFNA4 and EPHA2—were strongly associated with 10-year risk of ESKD in all cohorts. Furthermore, circulating levels of these proteins correlated with severity of structural lesions in kidney biopsy specimens. In contrast, expression levels of genes encoding these proteins had no apparent effects on the lesions. In in vitro experiments, mimics of miR-1287-5p and miR-197-5p and inhibitors of miR-339-5p and miR-328-3p upregulated concentrations of EPHA2 in either cell lysate, supernatant, or both.

Conclusions This study reveals novel mechanisms involved in progression to ESKD and points to the importance of systemic factors in the development of diabetic kidney disease. Some circulating miRNAs and axon guidance pathway proteins represent potential targets for new therapies to prevent and treat this condition.

  • chronic kidney disease
  • diabetic nephropathy
  • end stage kidney disease
  • progression of renal failure
  • Copyright © 2021 by the American Society of Nephrology
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Journal of the American Society of Nephrology: 32 (9)
Journal of the American Society of Nephrology
Vol. 32, Issue 9
September 2021
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Comprehensive Search for Novel Circulating miRNAs and Axon Guidance Pathway Proteins Associated with Risk of ESKD in Diabetes
Eiichiro Satake, Pierre-Jean Saulnier, Hiroki Kobayashi, Manoj K. Gupta, Helen C. Looker, Jonathan M. Wilson, Zaipul I. Md Dom, Katsuhito Ihara, Kristina O’Neil, Bozena Krolewski, Caterina Pipino, Meda E. Pavkov, Viji Nair, Markus Bitzer, Monika A. Niewczas, Matthias Kretzler, Michael Mauer, Alessandro Doria, Behzad Najafian, Rohit N. Kulkarni, Kevin L. Duffin, Marcus G. Pezzolesi, C. Ronald Kahn, Robert G. Nelson, Andrzej S. Krolewski
JASN Sep 2021, 32 (9) 2331-2351; DOI: 10.1681/ASN.2021010105

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Comprehensive Search for Novel Circulating miRNAs and Axon Guidance Pathway Proteins Associated with Risk of ESKD in Diabetes
Eiichiro Satake, Pierre-Jean Saulnier, Hiroki Kobayashi, Manoj K. Gupta, Helen C. Looker, Jonathan M. Wilson, Zaipul I. Md Dom, Katsuhito Ihara, Kristina O’Neil, Bozena Krolewski, Caterina Pipino, Meda E. Pavkov, Viji Nair, Markus Bitzer, Monika A. Niewczas, Matthias Kretzler, Michael Mauer, Alessandro Doria, Behzad Najafian, Rohit N. Kulkarni, Kevin L. Duffin, Marcus G. Pezzolesi, C. Ronald Kahn, Robert G. Nelson, Andrzej S. Krolewski
JASN Sep 2021, 32 (9) 2331-2351; DOI: 10.1681/ASN.2021010105
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