Table 2.

Most significant markers on association analysis

SNPChromosomeAllelePositionTypeGene/Closest geneAllele Frequency: CasesAllele Frequency: ControlsAllelic P ValueOR
rs1129740 (exm536067)6A32609105Missense C34YHLA-DQA10.670.491.187×10−62.11
rs92733496G32625869IntergenicHLA-DQB10.670.491.187×10−62.11
rs1071630 (exm536069)6G32609126Missense F41SHLA-DQA10.670.491.187×10−62.11
rs1140343 (exm536255)6C32629137Missense Q253HHLA-DQB10.670.491.187×10−62.11
rs69167166A30385235IntergenicTRIM390.230.101.082×10−52.59
rs92619476T30394628IntergenicTRIM390.220.101.480×10−52.58
rs28445806C31333303IntergenicMICA0.280.141.487×10−52.35
exm6962638A38095662Missense T186MDDHD20.060.151.016×10−50.32